Genome Release Data
The table below provides information about the genome releases used for each organism in the miRGen Genomics interface. The Genomics interface uses miRNA genomic location data from Sanger miRBase, and genome annotation data from the UCSC annotation database; we seek to include every eukaryotic organism for which compatible release data is available. (Note: If UCSC provides a more recent genome release, miRNA coordinates from miRBase are migrated up to the newer release using UCSC's liftOver facility.)
All releases used by miRGen will be reviewed and updated quarterly.
Last data update occurred on: January 1, 2006
Next data update scheduled for: April 1, 2006
| Organism | Genome Release | Release Date | Notes |
|---|---|---|---|
| A. gambiae | MOZ2 / anoGam1 | Feb 2003 | |
| C. elegans | WS120 / ce2 | Mar 2004 | Newer release exists, however WS120 is most recent release annotated at UCSC. |
| C. familiaris | canFam2 | May 2005 | miRBase miRNA coordinates provided for CANFAM1.0 are converted to canFam2 coordinates via UCSC's liftOver facility. |
| D. melanogaster | BDGP4 / dm2 | Apr 2004 | |
| D. rerio | ZV6 / danRer4 | Mar 2006 | |
| G. gallus | galGal3 | May 2006 | miRBase miRNA coordinates provided for WASHUC1 are converted to galGal3 coordinates via UCSC's liftOver facility. |
| H. sapiens | NCBI36 / hg18 | Mar 2006 | |
| M. musculus | NCBIM36 / mm8 | Feb 2006 | |
| P. troglodytes | panTro2 | Mar 2006 | miRBase miRNA coordinates provided for PANTRO1.0 are converted to panTro2 coordinates via UCSC's liftOver facility. |
| R. norvegicus | RGSC3.4 / rn4 | Nov 2004 | |
| T. nigroviridis | TETRAODON7 / tetNig1 | Feb 2004 |